● Solid-Phase Peptide Synthesis · Fmoc Chemistry
Peptide Synthesis Steps

A transparent, step-by-step view of our SPPS workflow - from resin swelling and amino acid coupling to resin cleavage, HPLC purification, and MS verification. Every stage is executed under rigorous quality control to deliver peptides of verified purity and identity.

7
Controlled Steps
Fmoc
Wang Resin Chemistry
QC
Ninhydrin Checkpoints
HPLC·MS
Purity & Identity Verified
Standard SPPS Workflow
Seven Steps from Resin to Pure Peptide

Each cycle of coupling and deprotection is verified before proceeding - nothing is left to chance.

01
 
STEP 01
Full Swelling of the Resin

Weigh 2.0 g of blank Wang resin into a clean, dry reaction tube, add 15 mL of DMF, and allow the resin to fully swell at room temperature for approximately 30 minutes. Complete swelling ensures uniform reaction sites and consistent coupling efficiency throughout the synthesis.

2.0 g Wang resin 15 mL DMF RT · ~30 min
02
 
STEP 02
Loading the First Amino Acid

At room temperature, remove the solvent from the previous step by frit filtration. Add 1 mmol (5 molar equivalents) of the first C-terminal amino acid, 5 equivalents of DMAP, and 5 equivalents of DIC, using DMF as the solvent. Allow the reaction to proceed at room temperature for 3 hours. After completion, wash the resin with DMF 4–6 times (5–6 mL per wash).

Capping step: Add pyridine and acetic anhydride at a 1:1 volume ratio and react for 30 minutes, then wash again with DMF 4–6 times (5–6 mL each). This caps the active sites on any unreacted blank resin, preventing side reactions in later cycles.

5 eq amino acid 5 eq DMAP · 5 eq DIC RT · 3 h Pyridine/Ac₂O 1:1 · 30 min
03
 
STEP 03
Fmoc Deprotection (Removal of the Protective Group)

Remove the previous solvent by filtration, then add 10 mL of 20% piperidine in DMF to the resin and stir under N₂ for 10 minutes. Filter off the solution, add a further 10 mL of 20% piperidine/DMF, stir under N₂ bubbling for 5 minutes, filter, and repeat this operation twice. Finally wash with DMF 4 times and methanol 2 times (5–6 mL per wash).

20% Piperidine/DMF 10 min + 5 min × 2 N₂ atmosphere
04
 
STEP 04 · QC CHECKPOINT
Ninhydrin Test - Verifying Deprotection Efficiency

Withdraw a small portion of resin, wash three times with methanol, then add one drop each of ninhydrin, KCN, and phenol solutions and heat at 105–110 °C for 5 minutes. Interpret the result as follows:

Deep Blue → Positive Reaction

Fmoc removal is complete - free amine groups are confirmed. Proceed to the next coupling cycle.

Colorless → Incomplete Removal

Protecting groups have not been fully removed - repeat the deprotection procedure above before continuing.

Ninhydrin · KCN · Phenol 105–110 °C · 5 min
05
 
STEP 05
Coupling the Second Amino Acid & Fmoc Removal

Weigh 3 molar equivalents of the second C-terminal amino acid, 3 equivalents of HBTU, and 3 equivalents of HOBT into the reaction tube. Dissolve completely in an appropriate volume of DMF, then add 10 molar equivalents of neat DIEA and react at room temperature for 40 minutes. Wash with DMF 4–6 times (5–6 mL per wash) and test a small resin sample with the ninhydrin reagent - the result should be colorless.

Then add 10 mL of 20% piperidine/DMF to remove Fmoc in two stages (10 minutes, then 5 minutes), followed by DMF washing 4 times and methanol washing 2 times (5–6 mL each). Test a small resin sample again with the ninhydrin reagent - if the result turns blue, the coupling is confirmed and the next cycle may proceed.

3 eq amino acid 3 eq HBTU · 3 eq HOBT 10 eq DIEA RT · 40 min
06
 
STEP 06
Iterative Coupling Until Sequence Completion

The coupling–deprotection cycle is then repeated in the same manner, amino acid by amino acid, until the final N-terminal amino acid of the target sequence has been incorporated. The last Fmoc protecting group is removed, and the resin is drained dry under filtration - the full-length peptide, still anchored to the solid support, is now ready for cleavage.

Cycle: couple → deprotect → verify Until final N-terminal residue
07
STEP 07 · CLEAVAGE & RELEASE
Resin Cleavage, Purification & Product Analysis

Finally, cleave the peptide from the resin using a trifluoroacetic acid cleavage cocktail for 2 hours:

95% TFA : 2% TIS : 2% EDT : 1% H₂O · 2 h cleavage

Filter the reaction mixture to obtain the peptide solution in TFA. Evaporate the cleavage solution as thoroughly as possible under a nitrogen stream, then precipitate with diethyl ether and centrifuge; wash the precipitate with ether 3–5 times to obtain a white solid. Dissolve the crude product in pure water and complete the final two stages:

H HPLC Desalting & Purification

The dissolved peptide is desalted and purified by HPLC, then lyophilized (freeze-dried) to yield the crystalline final product.

MS Mass Spectrometry Analysis

A sample of the final product is analyzed by MS to confirm molecular weight, verifying peptide identity and integrity.

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16 Years
Quality Management Experience
7 Steps
Fully Controlled Synthesis Workflow
HPLC + MS
Purity & Identity Verification
Global
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